rcome feasible issues with synthetic feasibility, and e. g. indicate paths to additional very easily synthesized molecules. Examples are given beneath and chemical structures are given in Figure 5A–H. The drug/NP pair formestane /testolactone is one interesting drug/NP pair captured by this method. Testolactone GSK525762A from the DNP set, transformed GSK525762A from e. g. progesterone by the fungi Aspergillus tamarii, had the ED 0. 15 to formestane from the GVKBIO_DD set. Testolactone is, just as its close and structurally incredibly comparable neighbour, an approved aromatase inhibitor applied to treat e. g. breast cancer37. Also the two NPs 10 epi 8 deoxycumambrin B and 11BH,13 dihydro 10 epi 8 deoxycumambrin both isolated from Stevia yaconensis had short EDs, of 1. 11 and 1. 04 respectively, towards the approved aromatase inhibitor formestane .
The compound 13c is moderately active although 13d has been discovered to have a pronounced activity38 as aromatase inhibitor. Structures of formestane and its NP neighbours are given in Figure 5A. One more example of an interesting drug/NP pair captured by this method is 4 ,5,7 trimethoxyisoflavone Thiamet G , isolated from Ouratea hexasperma which has the ED 0. 4 towards the well known anticoagulant drug warfarin . 14a has been shown to exhibit anticoagulant activities39, just like its drug neighbour. Also, both 1,3 dimethoxy 2 anthraquinone , isolated from Coussarea macrophylla and galangin from e. g. Helichrysum nitens are close neighbours to warfarin . Any studies performed regarding anticoagulant properties of these two compounds could not be discovered in literature.
Structures of warfarin and its NP neighbours are given in Figure 5B. The antidepressive drug moclobemide , which acts by inhibiting the enzyme monoamine oxidase has an active close NP neighbour in formononetin , isolated from Sophora flavescens. Formononetin has been Ribonucleotide shown to inhibit MAO40. The ED between the two compounds is 2. 6 and their structures are given in Figure 5C. The HIV 1 RT inhibiting drug lamivudine has an active NP neighbour in littoraline A , isolated from Hymenocallis littoralis. The ED between the compounds in this drug/NP pair is 3. 4, and just like its neighbour, littoraline A inhibits HIV 1 RT41. Littoraline A is also a close neighbour from the HIV 1 RT inhibiting drug zalcitabine .
Zalcitabine also had three close NP neighbours that, to our expertise, has not however been tested for HIV 1 RT inhibiting activity; the structurally incredibly comparable NPs pentopyranine A isolated from Streptomyces griseochromogenes ; clavinimic acid , isolated from Streptomyces clavuligerus ; and dioxolide A isolated from Streptomyces tendae . The ED between zalcitabine and lamivudine Thiamet G is 0. 2. Structures of these drugs and their close NP neighbours are given in Figure 5D. Also GSK525762A the investigational new HIV 1 IN inhibiting drug elvitegravir features a close NP neighbour with comparable mode of action; integrastatin A , isolated from Ascochyta sp. , inhibits HIV 1 IN42 and also the ED between the two compounds is 2. 7. Structures are given in Figure 5E. The antihypertensive Thiamet G drug amlodipine acts by blocking calcium channels. The employed method captured an NP neighbour of this drug, the compound manoalide isolated from the sponge Luffariella variablis, that also has been shown to block calcium channels43.
The ED between the two compounds is 2. 9 and their structures are given in Figure 5F. Quite a few interesting drug/NP pairs with short GSK525762A EDs, where the activity from the NP remains to be investigated, had been highlighted by this method. The neuraminidase inhibitor zanamivir , applied to treat e. g. avian flu, was derived from the NP 2 deoxy 2,3 didehydro Nacetylneuraminic acid 44, 45, a NP extensively distributed in animal tissues also as in bacteria. The ED between these two compounds is 1. 9. Zanamivir features a close NP neighbour, N L asparagine , within ED 0. 4 . These two structures do have incredibly comparable fragments, but their relative arrangement is extremely unique.
The antilipemic drug simvastatin had been derived from the NP mevastatin , an antifungal metabolite from Penicillium brevicopactum. Also simvastatin has many close and structurally comparable NP neighbours, e. g. dysidiolide and 8 pimarene 3,15,16 triol , both within ED 0. 4, which might be not however investigated for antilipemic activity. Structures are given in Figure Thiamet G 5H. CONCLUSION Author Les Brown famously stated: Shoot for the moon. Even when you miss, youll land among the stars46. It may sound like close sufficient, but taking into consideration the vastness of chemical space, exploration and drug discovery needs to be additional precise and focused than that. To create the navigation in chemical space less complicated, this can be advantageously divided into smaller sections or neighbourhoods. A 1st step will be to lower the vast theoretical chemical space by looking at the region encompassing only tiny molecules, i. e. CSSM. A second challenge for drug discoverers will be to determine biologically relevant regions of chemical space, where we can, with a greater probability, come across future leads for drug d
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